Scaffold Ga0114880_1000016

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1000016
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87909
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (9.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F015337	Metagenome / Metatranscriptome	255	Y
F024553	Metagenome / Metatranscriptome	205	Y
F051118	Metagenome	144	Y
F055726	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100001657	F014975	N/A	MEAVFNKYKNMLVVHKRYKGHVCGYTDSHIILAVETRDDKNFWRKLQNPYIMEEYKDVKYRYIFEDERELVKQFENVRQNN*
Ga0114880_100001660	F051118	N/A	MYNREILEKIIEEVGADTATEFCHLVSLMYDIKYNASKEKDTLSEYDFERVWWNEAYIELKKDTNS*
Ga0114880_100001679	F055726	N/A	MNWLEDWEYPNDHIYAMERQHDIEIAWQQWEEQQERNKRLPAIITVEKPTLKDEAICNTRTIRRAHQTKL*
Ga0114880_100001684	F024553	N/A	MATLSKEIQEVINNTSDVLYREEIYINGKHEYDYHKLNAAPHATVHTLYFSDNDEWDDVVKKSVAMQLVDTGDGIEIIGVNTKKSIDYLEAEQLHILLRLASSHSVYQIAEPTPKKDF*
Ga0114880_100001691	F015337	N/A	MKQIKMEPTEFYQFRKLALAMCVVFMCTMTQGVYIVEASIDQLDKLGY*