Scaffold Ga0114876_1173028

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1173028
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 762
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009136	Metagenome / Metatranscriptome	322	Y
F009262	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_11730282	F009136	N/A	MNRLKKLGFKKIPGTEPGFHMYELTPAKLQSFDENFRAQASKRPSVQARKRTSLTSK*
Ga0114876_11730283	F009262	N/A	TMEQIAKELSKLNATMAEILYLIQKEMKRGEELSKKYEKERNE*