Scaffold Ga0114876_1092148

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1092148
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1229
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034503	Metagenome	174	Y
F071155	Metagenome / Metatranscriptome	122	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10921483	F034503	AGGA	MNKDEAHHLLNKRKQGLAVPLYLVNRALVVSGDISMACSPCKTTWMEGSGMAQGQGIRELFYPFVDRDNPRLNPTNEGA*
Ga0114876_10921484	F097199	AGGAG	MSEALTRVIDEQQKRIDDLLEGNKKLIERSARVFKQNDELFEAMARLLDYDLPSDNITDKQWSEYCSLKHEVRMQMLDAGYCLRCYEFICECDE*
Ga0114876_10921485	F071155	GAG	MRHDIDYKKVHAKVGDKIPVYPFSEKISPFVGVVQKVKMNKFGRISYVVDGQDVFAEELLPAKGQAKLKMRAC*