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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008448 Open in IMG/M |
| Scaffold ID | Ga0114876_1053681 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1803 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012105 | Metagenome | 283 | N |
| F036604 | Metagenome | 169 | Y |
| F041721 | Metagenome | 159 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114876_10536812 | F012105 | GGAGG | MIPVAIRRHSLQDLTLGQSTLLTVPSCEERQIRRAIGVVNAERTDGMRLKTLRTPDGLRVWLVECVEVADSTEWKTGKSKRFPGRDPVAVQKAVVKLNEWARVLRRPYRFRVIVRDSVPVVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIVRAKWRMKKRGIRFIVRNIGESVWNVERVSE* |
| Ga0114876_10536813 | F041721 | GAG | MESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRDGRLTGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHVVETFWRQTLRQWQSYRRLGEVLQAAEDCTPETHEERWRAVYECLGWNPDTAREQYLERRAGR* |
| Ga0114876_10536814 | F036604 | GGAGG | MSLIQTPEELANAIRNDPQRVAECLHRINRFGGQVPNCTVLRHSLHVFERVDADPTASDRARLWALLHDCHEVLTGDVVRPYVTARLRMDQDEIDAAIVRRLPMRVPQPGSMSWEAVIAADRAVGAWELEQIQQGRAPYDLYQFPAKSWADLVREFITIGGAA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |