Scaffold Ga0114876_1044709

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1044709
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2045
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10447093	F045551	GAGG	MTEQRELEILRPYVAACGELVSSNFKLGEHLKKIDRLLLEVLMGDVDPMQAMINRQKIKDEFEEKA*
Ga0114876_10447094	F028744	N/A	MSNQYEFLYECDELGLRLRCLFEYEPEEIGSIEPISGMKLEPDYPEVWTLVSVFLPNSNLDLSGVLHPDVISQIERDAATYFEETRNVI*
Ga0114876_10447095	F031377	GGAG	MITNAHEFISVDRKNQRLTPYNTGKVQIGLLYQLPPPEMTSSEELVQAALMGWSSIHRPVPLWPVTIGSVIVGFLIILTVG*
Ga0114876_10447096	F039000	AGGA	MTKQTDDVDKDIGQIMDNAQTLLNFCATTFVKPADAWFACLVSSAILTAELSVPLDKFLEGFEHAYRDAMKAKKDMGASYDH*