Scaffold Ga0114876_1043817

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1043817
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2076
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044434	Metagenome / Metatranscriptome	154	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10438171	F044434	N/A	MIKPMYIMEKLKKQVRNYQLYAGKTYVQYEQDGFTAYQNYLYKRALYGLDALTEKELATM
Ga0114876_10438174	F049561	AGGAGG	MTKIKVELEETDLFNAIKKIIDHPNRVEIAKGLTSIIAPHEKLSSIFFKIYFGGAAPQVLPEGTMITVNPNRLSYKTNVDGMKRLGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDSNDKSYEETGFINYQDVISIIEEL*
Ga0114876_10438175	F096905	GGA	MESKIFTSVLGFNFELNLVDNDGEPIRTGARRIDYLSSETPSVGTKIGGESWFTNFNEPLLSKIRDYRRRND*
Ga0114876_10438176	F098924	N/A	KTYPKNNKFEVLIIGEDRTDFQEMLGITNKRRDELMKLAFNSYKTEDLYSSACKVAVAECKHINEVVFTISMMAKLKEMANNPLSAILSGINHGE*