Scaffold Ga0114876_1043351

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1043351
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008881	Metagenome / Metatranscriptome	326	Y
F014119	Metagenome / Metatranscriptome	265	Y
F100713	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10433511	F008881	N/A	MKQVVCINDSRLPEGAQVVKGREYTVADEFVNNYDQRVYIIEGIANEGTTKMGLRWIGYDANRFAEPESLMTEVKE
Ga0114876_10433513	F014119	N/A	MNITREKVMNLLRPAMNAIIVITIGTAMFRLGIAYQKGKNKEAIKVENPYAHAYSPEEISIAVNESNELIMIERATGKYIVYSDAIGQTIFGMYANRIHQETMNAGK*
Ga0114876_10433514	F100713	N/A	MTFKTKTKARFKSFLRRLGLLCKKPTEPTKRIRISKTINPDGSTTQHDRLTKQPLYEGNTFESELHIYNEIKKTVRKSRKPKK*