Scaffold Ga0114876_1027562

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1027562
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2829
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F031792	Metagenome	181	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10275624	F085348	AGGAG	MTPTGIALKVTNKDGRESFPCYEAYGWDKVNQIINNTLEIEHVAKVEIVDINGRG*
Ga0114876_10275625	F031792	GAGG	MGYEPELNDPIFYAEEAEPPVKCFSCGDPLDRDDIVWADVEGQVREKESNDTAWCVVCLPSAEDSNE*
Ga0114876_10275626	F000821	GGAGG	MNKEYLEAKFDLCINQAEKNLKEEEIAEAIKNLKRANSALSQLFGFEEEDND*
Ga0114876_10275627	F001477	AGGAGG	MTREFITKAHYPESNIYTIHPKKSDLILFYEVLTPEGENEWGGANAEHAIQWLSLAPTGSRVLVSAWDSDEEDAHLVGQTIDITDIVRAASL*