Scaffold Ga0114876_1022594

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1022594
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3228
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F006016	Metagenome	383	Y
F039525	Metagenome	163	Y
F056420	Metagenome	137	Y
F091924	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10225941	F006016	N/A	MTTATLIQTEALISTITSDIDSLYVLDQQAKALAEQIKALKDSIANKYGEGEHKGELHSVTVKMFPVSGTVDYKKLCVAYSITDEVLATFRKEGRADIRVTPAK*
Ga0114876_102259411	F003065	GGAG	MSDAELNIWERALGWRKRQMIQRQLDPITNKIRNDTLEEVAKEFEKMQAFEKDTMASFAAYVRGLKK*
Ga0114876_102259412	F091924	GAGG	MTEEIWAPEWIEQNPELANKAITELQVKVQELESKLKHATVKAANLEKQNKEYKLTIKDMDRRIMRGLKD*
Ga0114876_10225944	F056420	GAGG	MTTLFKLEEHLMMLLVEDKICFEEGDWDRLENIRLAIDDTRDQINSFKKVPA*
Ga0114876_10225947	F039525	GGAGG	MSETKMSDYIKGFNAGVDCVLNEIERLEKIAPINLEQLLKHLDPQRDQKTAQKPEKTPS*