Scaffold Ga0114876_1013544

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1013544
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4514
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F011580	Metagenome	289	Y
F014489	Metagenome	262	N
F020664	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10135441	F011580	N/A	GLTMTQTQALTKALILALIAPSDEKATQASDLAESIAQGLDFAQVEQCKADALAMIEGA*
Ga0114876_101354410	F014489	AGGAG	MELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGYALEIAETWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLTHPRKYV*
Ga0114876_101354411	F004231	AGGAG	MSVKPKDFQHEICVYLEGVGECLVCFDILTPEDELDADHSDDYEIDFSVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCF
Ga0114876_10135444	F020664	N/A	VAKKIINRPKYDDMQGHLFKLTESERHILKTIGGGSYAEGVRICIMWGAHFYNLGLTTEMDLKHIGLVTVSTTDNYPHE*