Scaffold Ga0114876_1009881

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1009881
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5515
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F040067	Metagenome / Metatranscriptome	162	Y
F046244	Metagenome	151	N
F052462	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10098811	F040067	AGG	MLNLSSSSGGGNYIRFMPSANAWLNSNKEEFKPKKMVVDTDSLQTGWMH
Ga0114876_100988110	F021491	AGGA	MSVQKKIEEMVLKYILAAEGKARIMSPPDIGKLVREAMHKGAMVGYDAGMKMSLRAHGNELEIAELTVKELTERVKELEMQMIAQQ*
Ga0114876_100988112	F052462	AGGAG	MTRHIGISVPHRRVDEDDDIQTYKRAWVSLTDEQIHECIAYGKGGCEIEQTARNIELKLKGLNYD*
Ga0114876_10098813	F046244	GAG	MIDEERNAMREHIVWLTKELEDTRTKLKIRDELLSELLDPDQLGHAVTNEVRGRIYTILHLQENN*
Ga0114876_10098818	F023804	AGGA	MLETLFRFKCEVEGVTLVCFLEHEPAEFNHGEAPDFPACMNLVNAYCDKVDIAHLLMQSIVDHICEEALTQFNSESDE*