NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1009310

Scaffold Ga0114876_1009310


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1009310 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5737
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016262Metagenome / Metatranscriptome248Y
F023325Metagenome / Metatranscriptome210N
F026511Metagenome / Metatranscriptome197N
F052474Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0114876_100931013F026511N/AMNTTTEIQYVGEATMITSDCIAIAFNRPTGSNPVNINGYPLAEGQTLRISQNVGDIDRTQYQIYFGTGTGADECYVFRTLILDSYHNG*
Ga0114876_10093104F016262N/AMIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQGNTFAKEAGKGMIAQAAGSFIKSKVPALGITGDGSDYSAGTMMSGLDTGVDNPMISAVPAGDFSAPSTDFTSGDAGEMDY*
Ga0114876_10093107F023325AGTAGMRLISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNATLGQQYYFQPDEVLDSQNNFITTIELVDSVTNATAPTVPTTDPLSATQASQGYLYICNTKREILATLPLYTLIRRLQAGKPQYLYFDEPVVWQNCFIQFESLGTAITTAHSVWLKVSYSPIDK*
Ga0114876_10093109F052474N/AVNNIIFNIMTDKEKILTAINKLAKLDANLADNLTKLAELAEKNKFVYEQAVKQLKSL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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