Scaffold Ga0114876_1009067

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1009067
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5838
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F025487	Metagenome	201	Y
F067537	Metagenome / Metatranscriptome	125	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100906712	F067537	N/A	MSTKRQFDYKIGDRVAERPKPHGIYTHNQQTRERIAQYRNQRYGEVVGVNYKKNSRGAAQKFLLVKWDHLMSPTEHATMRICPVSELERLTKEVLVPGE*
Ga0114876_100906714	F025487	GGGGG	MTSELIDLDLVDKTIALIPEQDWPQVQQVIVTTLVDNMPGSVLETLTGSYDNFDRAEGILYDYYQLPDKQQDLIVDAFKIMGAANCLELLSCLNLSNSQQ*
Ga0114876_10090672	F002985	N/A	MSYVIACWRWGTPHAITANKETNQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK*
Ga0114876_10090677	F087066	GGAGG	MTENQIQFLRGCCATILAFAASGLIAAIFLSPDEPKNNSKFEVLDQYEGCSVIRYTDPTTRWHYFLKCS*