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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008448 Open in IMG/M |
| Scaffold ID | Ga0114876_1006660 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7079 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013758 | Metagenome | 268 | Y |
| F031078 | Metagenome / Metatranscriptome | 183 | Y |
| F059951 | Metagenome / Metatranscriptome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114876_10066603 | F059951 | N/A | MSLQDYAAIAVAVVTVLAGVAALLRFVILHYLQELKPNSGSSIKDQVNRLETRVDKIYELLLAKGE* |
| Ga0114876_10066604 | F031078 | AGGCGG | MEAVIIGALGLMAIPAIRAAIKSYRSKKALADVAVDAIEAAVDAIDKKK* |
| Ga0114876_10066609 | F013758 | AGGA | MTAYTPDYKVLVNSVELTSVTVADLTITSGRTDIYQQPVAGYCQLSLLNFDNSGYDFTVGTSITVEVTNSVGTYIPIFGGTISDFTITVNSAGSLGYTTIATITALGALSKLPKIIDSATLTQDFDGDQIYHLLSQYLLGQWNEVPAAQTWATYDPTETWANAVNIGLGEIDQPGDYELIARSASNTDLYSICTAIANSAFGVLYEDANGNIGYADQTHRQDYLSANGYTELDANHANGLGLSVTTRAGDLRNSFTINYNNNGSSTYTATDPISQSAYGVYAEQYTSRIKHTADAEALADRYIELRANPYPKFQNITFVLGNPEIDNSDRDALINIFLGQPVWIQNLPLNIDQGSFQGYIEGWTFRASLNNLTVTFNASPVNFSQVAVKWEQVNAAETWNTLNTSLTWLDAIGVVA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |