Scaffold Ga0114876_1003248

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1003248
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10983
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100324811	F003805	N/A	MTMRPIEHSTESQFHKAATDKWLVDRFNSGDYRGLLEAALILNTLHQLEKTKTAWAVREAADNLAEHFKMDRDSA*
Ga0114876_100324813	F006109	GAGG	MAGDRWVTAVYGPGNGLGLTANKEDASSWVTYERAVAAAKVVMQCTNNPVFVHSVQEPAFPRSWG*
Ga0114876_100324814	F022403	AGCAG	MPLRHGQKVYCQLLLDMNRYKLAEELAAREGKKVTGMLREMVYAALEKSLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSESDA*
Ga0114876_100324822	F021513	N/A	MNMHILSEHQFQLITDALEQAHAALNQCQHIELDLTKPKQTIQLPTGEKITRKSQSQVKTRKSSRKGKRGVASLTEGKVLEIKRQLAAGGKSVAKIADEFGVHSTTINNIKWGKTWKGVALQQTAEPVA*