Scaffold Ga0114876_1003172

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1003172
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11147
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100317211	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSSEKARLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPATAAKKPKLARAKNGPREAARRRLKLVEKKGESTDR*
Ga0114876_100317212	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGKGIGLTGAKEDASSWVTYERAVAAARVVAECTNSPVAVHSVDEPAYPRSWK*
Ga0114876_100317214	F004722	N/A	MSRARTGRELVMEWLMREIRLAKTADLQRAAAFLEWARDVRKGCSKQRGGARVAQSNAWRKRVDDDVRW*
Ga0114876_100317221	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTADVQKVKSQSKTRKSSRKGQRGVAVLTEPKVLEIKRQLAAGGKTVGAIAREFGVHMTTINCIKWGKTWKHVQIQQPVPVVVAD*
Ga0114876_10031726	F002317	N/A	MDHHEEALITAKPPENPFNQIVPALLTAAVVGLAGLFMQVAKLDQSVSTVAADIQELKNDSKERLTDLETRVRHIEMTVSSKK*