Basic Information | |
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Taxon OID | 3300008448 Open in IMG/M |
Scaffold ID | Ga0114876_1002299 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13591 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (15.15%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016262 | Metagenome / Metatranscriptome | 248 | Y |
F019993 | Metagenome / Metatranscriptome | 226 | Y |
F021092 | Metagenome / Metatranscriptome | 220 | N |
F023325 | Metagenome / Metatranscriptome | 210 | N |
F026511 | Metagenome / Metatranscriptome | 197 | N |
F028461 | Metagenome | 191 | N |
F052474 | Metagenome / Metatranscriptome | 142 | N |
F088542 | Metagenome | 109 | N |
F095365 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114876_10022991 | F088542 | N/A | FMPAAQGAKVFVEANLEKIQKGQIPYDSLTTREKRVYRGKTSNTFSNTFTFKDKRYYDPTGVLRKTLDNIPALKGKRNLTNLLPESNFKDLFNQQINPTKGKIKEKDRSKWLEFSSSLYDFNKGDKKQFYRDESGSLMDIVTKLQKARKQGREVRVIDTDGSIKTGVLAIDRMREFEAEKLKQFVDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP* |
Ga0114876_100229916 | F019993 | N/A | LLFANFVEMNKEVKLLLVAGVGYLGFKAYQIYTALKKLTWSPTGINFSIIKERGAIGGTLFVDIINPTAANISVDGFTGTVTTTSGTLLGDYKGTAITLKPGSNNVRISWGSRGTTALIPLALGIFKGQYPVLKFNTVMNVKGFPIPTSFTMNTKDYAPTLR* |
Ga0114876_100229919 | F095365 | N/A | MEKYIQAAYEYYRQDTPEGYMSYEAFKAAICKPSTPWWVWLAGGAAVGYSLKK* |
Ga0114876_100229920 | F016262 | N/A | MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQGNTFAKEAGKGMIAQAAGSFIKSKVPALGITGDGSDYSAGTMMSGLDTGVDNPMISAVPSGDFSAPTTDFTSGDAGEMDY* |
Ga0114876_100229923 | F023325 | AGTAG | MRLISPLIEYLTVSKKMKQVGSFEGAYTKSVYLPFASNATIGQQYYFNPDEVLDSQNNFITGIELVDSVTNATAPTVPSTDPLSATQAAQGYLYICNTKREILASLPLYTLIRRLQAGKPTYLYFDEPVVWQNCFIQFESLGSPVTTSNSIWLKVTYSPIDK* |
Ga0114876_100229924 | F021092 | N/A | MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEEGVEKMRKFLMKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKADSEPITGYVVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELEIQYLRDQHGREIDRLKSDHEAALKAAKDSNQMFSQGLGMLMQRMGVGE* |
Ga0114876_100229925 | F052474 | N/A | MTDKEKILTAINKLAKLDANLAENLTKLAELAEKNKFVYDQAVKQLKSL* |
Ga0114876_100229929 | F026511 | N/A | MNTTTEIQYVGDATMITSDCIAIAFNRPTGSNPVNINGYPLSEGQTLRISQNVGDVDRTQYQIYFGSGAGANECYVFRTLILSDYHNG* |
Ga0114876_10022993 | F028461 | N/A | MKKQNAATMFKNPQLQESIIKQYKEAGLDFTVKHSNYNTQIIGGESTLKFIQTEHSIRVFVAYNKIVKDLKQSERTVEILQGEWSTENFDSKNGLKPCKFKTVLNLDITSAYPYCLWINRLITEDTFNFLMQLPKNERLPAIGMIAKKSVWIEYKKGKATDWDLKQGEYGNIFFFIIQQITDLMAWAAEIAGDDFLFYWVDGIFLKPGISKKKLQEITAIFAEQGYYYKYENVKNFSVVRENDKLFINMIKNGEEKPYTMYDKNLARNFTKVLQHLENA* |
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