Scaffold Ga0114876_1002299

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1002299
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13591
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N
F052474	Metagenome / Metatranscriptome	142	N
F088542	Metagenome	109	N
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10022991	F088542	N/A	FMPAAQGAKVFVEANLEKIQKGQIPYDSLTTREKRVYRGKTSNTFSNTFTFKDKRYYDPTGVLRKTLDNIPALKGKRNLTNLLPESNFKDLFNQQINPTKGKIKEKDRSKWLEFSSSLYDFNKGDKKQFYRDESGSLMDIVTKLQKARKQGREVRVIDTDGSIKTGVLAIDRMREFEAEKLKQFVDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP*
Ga0114876_100229916	F019993	N/A	LLFANFVEMNKEVKLLLVAGVGYLGFKAYQIYTALKKLTWSPTGINFSIIKERGAIGGTLFVDIINPTAANISVDGFTGTVTTTSGTLLGDYKGTAITLKPGSNNVRISWGSRGTTALIPLALGIFKGQYPVLKFNTVMNVKGFPIPTSFTMNTKDYAPTLR*
Ga0114876_100229919	F095365	N/A	MEKYIQAAYEYYRQDTPEGYMSYEAFKAAICKPSTPWWVWLAGGAAVGYSLKK*
Ga0114876_100229920	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQGNTFAKEAGKGMIAQAAGSFIKSKVPALGITGDGSDYSAGTMMSGLDTGVDNPMISAVPSGDFSAPTTDFTSGDAGEMDY*
Ga0114876_100229923	F023325	AGTAG	MRLISPLIEYLTVSKKMKQVGSFEGAYTKSVYLPFASNATIGQQYYFNPDEVLDSQNNFITGIELVDSVTNATAPTVPSTDPLSATQAAQGYLYICNTKREILASLPLYTLIRRLQAGKPTYLYFDEPVVWQNCFIQFESLGSPVTTSNSIWLKVTYSPIDK*
Ga0114876_100229924	F021092	N/A	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEEGVEKMRKFLMKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKADSEPITGYVVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELEIQYLRDQHGREIDRLKSDHEAALKAAKDSNQMFSQGLGMLMQRMGVGE*
Ga0114876_100229925	F052474	N/A	MTDKEKILTAINKLAKLDANLAENLTKLAELAEKNKFVYDQAVKQLKSL*
Ga0114876_100229929	F026511	N/A	MNTTTEIQYVGDATMITSDCIAIAFNRPTGSNPVNINGYPLSEGQTLRISQNVGDVDRTQYQIYFGSGAGANECYVFRTLILSDYHNG*
Ga0114876_10022993	F028461	N/A	MKKQNAATMFKNPQLQESIIKQYKEAGLDFTVKHSNYNTQIIGGESTLKFIQTEHSIRVFVAYNKIVKDLKQSERTVEILQGEWSTENFDSKNGLKPCKFKTVLNLDITSAYPYCLWINRLITEDTFNFLMQLPKNERLPAIGMIAKKSVWIEYKKGKATDWDLKQGEYGNIFFFIIQQITDLMAWAAEIAGDDFLFYWVDGIFLKPGISKKKLQEITAIFAEQGYYYKYENVKNFSVVRENDKLFINMIKNGEEKPYTMYDKNLARNFTKVLQHLENA*