Scaffold Ga0114876_1002128

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1002128
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14180
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F050308	Metagenome	145	Y
F059678	Metagenome	133	N
F061576	Metagenome	131	Y
F081233	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100212811	F050308	N/A	MFLILCSLAASCQVTKVDNGFLISREYAEYITARFDSLDAYKIAYGECVDRAVECDALLNKSERLILDLKKQQNIQSDMLLLKESIIKSHERDIMIYKDIEKQLNTEKRMKKMWKITTYAFITVSLSAITYSILK*
Ga0114876_10021282	F081233	N/A	MIYRPKIKVHSDDEINYWKHLINEKRRQNKTLQRWLVVSDVHRPFHNQILWQKLLRLVSEMGTNLHGLVLAGDYLDLYTLGSYNAESLANLSGLTLQDEYIDGLQGIDDINSAFKGAKKYFLFGNHEDRYFRHIKEKDNAKYGGALINPTEALYLHERGWEVKTDWQSDYFTLGKHLDIVHGIYTSIHAAKAHLDKTQHSVMFGHTHRVQCYHTGNKAAFNIGGLFDIKSKGFFYMPRFQRQLWANGFAIVNVTDNGDFYVEQVNVWADKFLANGKMY*
Ga0114876_10021283	F061576	N/A	MKESDWVRKLILSSNPDNIELGLIMNLTFNYYPLTAKFYKKNAKKKFWQPSRNYSVIETENRYYSWVALLNNELKTHRCYFWLDFKEPKFKTPWQAWQQHITSGAKWAYNGPLFNYPSHPYTSMFMR*
Ga0114876_10021285	F059678	N/A	MKTLLFLLLFSASAYAQTDTMYCIQILSTRHPEYIRAEHLAMCTLEQAMVEQTDSLYRIMFVYDTYEEAEIMLTTWKRAHKDAFICRRNKKQISNYYPFYTYD*
Ga0114876_10021288	F046994	N/A	MIFRKRNRAEQNESNYQKWLKTYIPETTKQRIELVRVFTDRADNNFYILKNPANLTRERAQRIEEAMTAIDFGINKTEVVEKLTGMLEIVEDMPWQNMTRDKLKEFHTKSKDQLNDILYRLKNVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKLDAIKKDDELRAFFLNSIEQILKGSSALNV*