Scaffold Ga0114876_1001111

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1001111
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20365
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F025233	Metagenome / Metatranscriptome	202	Y
F028489	Metagenome / Metatranscriptome	191	Y
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F052406	Metagenome	142	Y
F053077	Metagenome / Metatranscriptome	141	Y
F082372	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100111115	F025233	N/A	MFVLQIHSGYIIPTDDVDGRTIYSIPSAGIEYAYKAEIVQYLETGQFSYDETLDDKVDPSMFKNK*
Ga0114876_100111124	F053077	N/A	MLYQLPNGKVIYLTIEQYLELTDEDVQYLMSLNAGEYALNPFTDSAVVENTKEKYYDFDYLTDDESDSIISDDEPFDEIIDLSGPTDI*
Ga0114876_100111126	F000716	N/A	MEKLKQDVRNYQMRSHTVMSYEQDGYNSYQNYLYKRALYGLDALTEKELATMCSKKKQRIVNVYKRAQVTLNKFKQQITIQYSNFLFSTLFPESPITQALLADTETDEKFKNTLTFKDLGITKEQIISIFMLEGILPKNFLSLEGPQNQLPRLKNDKTERM*
Ga0114876_100111128	F028489	N/A	MIMKMIGKDLKIKHTTTYSTFSVLPMNRGIDSKHVQKMITSLRLQGCVRVVICCRTNIIEGEWKTYIIDGQHMATALEREGAPIPYIEVEITSEEDLIEKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWKNMYDIEITMLAIIGVNNTAIQKSTGVIKTGNFKITNPNAEDMCKAFNDIFLKIGKSDRAVKFQFLNAFMQAYNPKYDHNKTMAAIDKHLKTVKLMAIGDETGAFIRKQIFKLPK*
Ga0114876_100111131	F047578	N/A	VKAICIDSSNKPAKIPVEQWIKQGETYTIIKVVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFVPLDDRVANMEEESVKEADLELI*
Ga0114876_100111137	F082372	N/A	MSEQETGWISALIKCDLCGYESLSVHHESSDKLECANCGNMSHFEVLKYYTEEE*
Ga0114876_100111141	F037129	N/A	MSVNKKDYKVVEVTDDHMTWYLVKKKFLWFFWKTIKNNSGSQMRYTSRKGAQSYINFLK*
Ga0114876_10011116	F052406	N/A	VAASIGYEIKSFTMHRVDIFSFLASDAAELTKMQTRLNQWMTAKSLVKYEIHTAGEYIIFNVCRKKEEA*