Scaffold Ga0114876_1000995

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1000995
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21614
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (46.34%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F011216	Metagenome / Metatranscriptome	293	Y
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100099511	F011216	AGGAG	VKKPISKTPRTDRQPVVTVAFQQFVKAGFARQLERQLAGANEKIKRLELQIDELGDLVKWLEGR*
Ga0114876_100099521	F013412	AGG	LYRDAEIITTDDGKTFLLAVIEFEQRTLGNGKPYSQRVQFRSFDRDDMEIVDQLVAGTYIMFDGDCDATADKSQTGWWYANPRVTGRIHEISHAS*
Ga0114876_100099533	F010835	AGGA	MNGVAMRTERALADWLAAQDWSASPLGTPACLTSYGHGAFNDPDLEDRMPDFPRIVIRSSTAVPVHPIDRTCELDVTATLQLSADDTSESDALLIVAAFENILQPLFVDDNISDLNTGDDDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANANT*
Ga0114876_100099534	F013879	GGGGG	MTPTVTVDTSRFDAAWREYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYYNRPVGSPAFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGQKMKDAAAKLRRRAAGSVGYLKSCVTKGIKKLSPSFQQFGGTRRAKKGSAQVRSVAANQALVNLANQYGLPYENVSMHRGSSAYAYNAKAGFNPHSHVRMNIGLADDQIGKVESIYSKAMQQAYDDEARELEIHIAAKLAEAFDGSESKGIVVQ*
Ga0114876_100099535	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFIWQGSLVRCIPAAITDANNVINGGFQDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGSLILQENTDALQLTFGKMIPVVGRTLTYDGRTLRIISAKRDGTGAYYVLELGAKTK*
Ga0114876_100099537	F017997	AGAAG	VNIIEQIVTALLKWLTGLAKTPPTVEDAKQDPELKKKLLDRIDRAGE*
Ga0114876_100099539	F031459	N/A	MQTDSTNNGSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFIAAAIGLYKSIKK*