Scaffold Ga0114876_1000651

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1000651
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26531
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (19.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100065117	F084221	N/A	MSNHQQQVAEGVTGTISSILLSVPAWMLDVEFALKIICLLLSGVASIFTIYKMNKKRR*
Ga0114876_100065119	F047677	AGG	MKWLKSIFSNESDASSKRVASILALLVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFANKKKSNDSTSQESN*
Ga0114876_100065120	F077297	N/A	MTQQAKNQIKGAAVIVVAVTICAVMQMMYICIKDSKKAIEGYERRAERATHVIDSLEATNVQRMLQIEELNEQLERNTAIYEANINAIDSLDKHGLRRAMHNLLSSLTEERYPGQSNE*
Ga0114876_100065126	F066778	N/A	MLKAQQPTKIGERTSSIIHMSYNREPDWNKLKPSIDWDEMEEKLADKLSKYINKNNTIMNQSVVKSQKFVRDWNGPSGTIYYFDLVLENGEVGQVGVKDMQSPKIAVGATIHYTAEERTGPTGRKSTNFKLQNPNPNPFNGAGKGIVQSAYTPRKESPEVQNSISRSVALNNAVLFCKEQKGAKASDVIETAEIFLAWLKEEEVKVSSPINTKLDEAADDEMPF*
Ga0114876_100065131	F072341	N/A	MSKELAASVLQSFNRSLSAEEKAIAECVSSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQTTYRSTSVKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKSKVWRELNKSLILPEAQSKPIEPTDPITALHEDAERYRNGKETWVEISAPFNCQRLFRQGIYKKSQWLPEVWERFEDIAKQKVEAKFKASNKVILGESAQSEFDALQKIELSRIVYIDIIKQLNKEKS*
Ga0114876_100065136	F093876	N/A	MNLFKRKKEPVDLNAKLLPELCSTYIIQWNYSDEIGMEATYAENIPFMFDARKCVGIQAEVEFRSDGTYYVGQRTLALMQGVDNALVIDVPYNEFKKHFQELKSNIITNDYIISRG*