Scaffold Ga0114876_1000376

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1000376
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35200
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (41.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F009805	Metagenome / Metatranscriptome	312	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100037622	F002333	N/A	MQLQTELNSAQALIYSRSNIRRAYADFDDTEISGIYLRDGNCIVVRCDGSEQAYDLTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYTHALGHLTSNAKLQQHWADKFIHLSDPNKVIALLQNDQTDLGHLVAPDGLRSPTRPIDLESDLEENASGVQASTLEPYCSCGSFQRQLLNVSLFQAEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALPSGTPDKCVAWWYAPPQDHISEGKFVLLHTKSGAQAPLTHWRTYRPKEVFSQEHAWDLFFNMLESHYVPFPGTALPQLQSAVKKK*
Ga0114876_100037625	F002738	N/A	MSIETYGLSSEQYAEFFGNNIRAAAALYLQTCNALASVNVDLKTILDLYQESVYATNDDCRRYQKANNPEAIKDNDLFGLTPSREELMEEIQSVNTKVDALVDYISKLVETTTDGLNGLVKVMDKD*
Ga0114876_100037627	F001018	N/A	MTHITKTKLEDLSIIKLYDHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYAMAAHEDALERIKKEGDLIAQAKRHHESQLTQLKNLLGWLRRALPLNSNRIQGKNYEFVLSKKKDFTVEITSDPEFWHTDERSKYCIQQETTTTKRIVVRSISGEVLSDRTEPKTKLETLPNLDAIRNAYQNGEHLPSGVKVEQQYAIRKNRLFSAKRMEAQAPEYFGELLQESDPAD*
Ga0114876_100037630	F008128	GAG	MEPVVVPKLTVSFAVDIDVEYNSFGGRTADEIAEALQDDLDDLLFELSPHVKGVYTSTTAINFND*
Ga0114876_100037651	F009805	N/A	VEIQIFMGEWINALQHRMSDAVDGDCFSLPTPMHLHAFLLLKEASFPNKNFKVEVRQESQV*