Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1000360 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35848
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (18.87%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

35848

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (18.87%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F024730	Metagenome / Metatranscriptome	204	Y
F028725	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100036026	F024730	N/A	MCIESLLGLKECSLPEPSTGLYIDELGINQTFLGQVITDQYDTGVDLFIDKRQFAWRKLSSDVLLRLTPAMKADTIIEGKRIGQVLTDYSNVQTQLGAGRYGGIRLKIDPNNLSYLNLYISDINLAIDDTNLNVPVLVFDMTTLKLVDTINYGQGGIEQFIGKQFKAGRKKLDLAFVYESQVDTIKFIPKKGACYDCGGKVREAHICPFVDAIGIELTTDGTNVLSSKTSKYTTGMSLNYNVNCDRESWMCAVGGLMALPLAYLTAVEIYNYALTIAPNQRVNTTITINKGSKPFATAPAFEGIVAARDTAMENYNLEIEALIKNMRLPDDNHCWDCRKNIKYVTALP*
Ga0114876_100036043	F005050	N/A	MGCVSYCDSDLLPHDLVNCNEYKLGGVSSLIIGKCGIVLVDPTSEVELEALLLSGDAIKVDDIRFALPAGSPIQVDSPIGCGTPIRINEDRTATLFDANVTDTNNEFWNDVNNRRIGWILAYMCDSGKTIYINPPLGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYNAPAGVFS*
Ga0114876_100036047	F028725	N/A	LVEVFKHDGHRYYRFPKETSLPLERFSMALSLMERISSGLSGSEMEQILDGMEKSLAAGLSNPKNAAVVAGYIHVIRERQNSVIHRDLLLNFAAIWVVRDDEDPTIINSDIHQSKLEVFDAMCREASHDFFSRLDIIPLMPLLTMSPQELQSLWEYNVVAQRKLMESLTMLNTHQESVQRKSKKNSAAK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1000360

Overview

Ecosystem & Geography

Associated Families

Sequences