Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1000335 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37045
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (51.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37045

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (51.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004134	Metagenome / Metatranscriptome	451	Y
F004898	Metagenome / Metatranscriptome	419	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048261	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100033536	F000919	GAGG	MRFRDIEFRWCKFNNKYELVRWHECEGKEYCYVIAFFDKGKECYDMRTIGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK*
Ga0114876_100033537	F036765	GAGG	MTIKATELLKLFTKAKQLDLSVEVREDKDGDYVIRIFEMFRPENFDENVVITQKGESDWNKGDYSFDFMMDVLDGALEEKRQEKIKEQKRQELLARLTSEEKELLGVK*
Ga0114876_100033538	F048261	GGA	MTERLNHKLDTSKLKTIKDVKNVFECMGLYSNASEDNEQYELLKEYFTIPNEPQEIKFELPRKSLEEISQELNKKIDKQIEDVEYKFAQLKYHQEYRYNQKFDRIIENFESAKKYGSFPTRITIGNLDCSKLTATGSNITSNFVIKSGGKEVGYYTMGNGYLRYYMNKKPTAISRWFMKNCLSFVWIDEK*
Ga0114876_100033541	F004134	GAG	MTKHPTNDWEWEDTAEEAFVQWFNDDYGSPYSLRSEWFFGDCKVQDENTLKDLMYKWLHASFLSGYNTGRCSKTNE*
Ga0114876_100033547	F003331	N/A	MTEKDKIFRNVWQCAYQRRYNAMCKGDWELYSREHQTLLMCLKIAKWTTFDTDKPHYLKYD*
Ga0114876_100033571	F004898	GAGG	MNLTELIEEIREIEIYGSDPVDWMGYLSSDDYWVPDEELAH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1000335

Overview

Ecosystem & Geography

Associated Families

Sequences