NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1000188

Scaffold Ga0114876_1000188


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1000188 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47117
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (87.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F000952Metagenome / Metatranscriptome822Y
F002597Metagenome / Metatranscriptome544Y
F017833Metagenome / Metatranscriptome238Y
F039983Metagenome162Y
F083753Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114876_100018813F000220GGAMSDEKPSDVLSKVLSYVDSPFKLFALILMAIFAFAGYFVWQNQELLVGAYKESKRMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNAKNNADVVSLMASEVPCGEYRAAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNEPADIQVARTMMEIAATMLSRSKQ*
Ga0114876_10001882F039983GGAMKSLLSEELVKQVFFYSDEKRPDPLIADEVDILQFAQKLEAVLRPMIAAEEHKRCVTIVAHMNREVANGLQNQRP*
Ga0114876_100018833F017833AGGMRTLSDLIGGIKARQAEIAASLVAGNATNWESYIRLVGHNAGLQEALDILNNLMKEDEDYE*
Ga0114876_100018834F000952AGGAGMATSDQEQKSVLVPQHKRMAMGEKLDGQSMKGSPAPTKQSGGLSQAKKK*
Ga0114876_100018850F083753GAGGMKHTEAQYISLGYKYERAQSPSAGQAAAQAIRTLLEAETIEDRTEARYLVERGRQEARGVSA*
Ga0114876_10001887F002597GAGMALNPAQIYDPRYHTFESWASLMCELYAAQNLQIPDAQTDWRLWGNGLNAIDVFSNEATPRTDQYENWFDWAEAMVAAVNPATQTT*
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