NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1000107

Scaffold Ga0114876_1000107


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1000107 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58543
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049582Metagenome / Metatranscriptome146Y
F062703Metagenome / Metatranscriptome130N
F074452Metagenome / Metatranscriptome119N
F080943Metagenome / Metatranscriptome114N
F091941Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114876_100010710F062703GGAGGMLKKKIDNSSKKGMMVGYIHHSSYVVAIEPGWNITPQAMAKLLQDRYSTKEAAIQLVDSAVLVPVFRKEDYEYVEGFGDVLESNLNFHGHNLRTHVGHLFLFMKGAWQYSDNAIDWDPVSEVFKDDSGVSFAGVRDALGAVA*
Ga0114876_100010719F049582GGAGGMFANKTKIHQELKNRFRNESDLTVSMMTRAISDLDISNPAALDVMYEDVMFFTGDWPESEGWGSSDTSALIRSVKETLISNGYLKAVA*
Ga0114876_10001072F080943AGGAGMITEATKERLRELEGQKITLEDELERLSYTNNFIRIAHIEQELFDVKDSIRKITQNHWFEDISREELQKEESTLQ*
Ga0114876_100010723F091941AGGAGMTRIQFDMSRLKREFTRESLQAWAEFLAECNRANFYYKSDGWSQGELVDFDDTGFAEMELKWGNDHNDHEQYSDLVEYDIEKFYHEFDKMKEKLMTNPEEVIG*
Ga0114876_10001073F074452AGGAMVRLGIDPFTRAEILETQRAQDYWEMSYVDKSNRIRYRMSRVLVEEEILDLLYCHGYISANQQAATINQTRRTDDNRSN*
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