Scaffold Ga0115362_100048064

Overview

Basic Information

• Taxon OID: 3300008416
• Scaffold ID: Ga0115362_100048064
• Source Dataset Name: Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 753
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 27.4
  • Long. (^o): -93.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013764	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115362_1000480642	F013764	AGGAG	MSSLTQTPNFFFFRKNHSQKTKSKSSGLPPYPKRAFVAVIVAIPMAFGLNIPLNSMVSFMPIWGVIMINAIVIPTYMTFIIPKASKLLASWLTSTQVNGVN*