Scaffold Ga0115224

Basic Information
Taxon OID	3300008406 Open in IMG/M
Scaffold ID	Ga0115224_1000004 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615 reassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008406 Open in IMG/M

Scaffold ID

Ga0115224_1000004 Open in IMG/M

Source Dataset Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615 reassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	313118
Total Scaffold Genes	325 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (11.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

313118

Total Scaffold Genes

325 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (11.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

National Institutes of Health, USA

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F089056	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115224_1000004156	F061925	AGGA	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPESIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSMLAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0115224_1000004209	F057446	AGAAG	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0115224_100000431	F089056	N/A	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0115224_100000494	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTNISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK*
Ga0115224_100000495	F040685	N/A	MKKLLFKLFFALAFVSISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQTFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115224_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences