Scaffold Ga0115411_1000018

Overview

Basic Information

• Taxon OID: 3300008347
• Scaffold ID: Ga0115411_1000018
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 175578
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (12.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F081454	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115411_1000018164	F063777	N/A	MKVLNIKISALPPENNSFWMKLLLYLCVPFLLIFGILFLIGWEIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDSQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISENVFY*
Ga0115411_100001818	F061925	AGGA	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWENPKSIDDIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0115411_100001881	F040685	N/A	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWETFTKKINLDKFKKLRDGPSQQAVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0115411_100001882	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGNGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTIKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0115411_100001884	F047127	N/A	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0115411_100001898	F081454	N/A	MKTFKLVLLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*