Scaffold Ga0114364_1062019

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1062019
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1291
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F010764	Metagenome / Metatranscriptome	299	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10620191	F010764	GGAGG	MIEVQKNYKLTLTEQQAKELYWILKDVNLDVDNELKLVYHELK
Ga0114364_10620192	F091921	GGAG	MIELRIVENEMGMRPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTCPYVNVEEIEND*
Ga0114364_10620193	F008943	GGAGG	MKNFEGIDWAVLSVFFIAIVAGAIISYDAQQQRVLFQQTYNKNLECRQALKDQTMVRVNEICGTVPVIGDFVK*