Scaffold Ga0114364_1040105

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1040105
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015330	Metagenome / Metatranscriptome	255	Y
F017628	Metagenome / Metatranscriptome	239	Y
F025723	Metagenome / Metatranscriptome	200	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10401051	F025723	N/A	SNDEISNAKMHHLDLSLPARTRIKLVNQMIDQHILWAHTWGVPVVCSTSIRADHDGFMKIHKKRGFTVNGSYAWIRTEKGMECLKSSISNLKTP*
Ga0114364_10401052	F015330	AGG	VVNKVTEYGALFNELNAERAAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIIRDEESTMEESLDDFLESLRKM*
Ga0114364_10401054	F103134	GAGG	MSGYGRVINGGKQMSKGNANHINDKLSGFDGENKRREIVAGAVRQAFTVRHLSDQTTNNVSAGGKFQTIKEKAKVNP*
Ga0114364_10401056	F017628	AGGA	MATYDIEALKADLPTAKELAQFVFDKTNGTISLDLIGKPKDDQYQVAKNALEGKKVPNEFITGENPYMDKKDEIPEDPLRVMPPRDPNLPDPDAQVHFFGATNMPHPLDPQSDKKVYIEFRKYENGLITYTITGPIEQVPVGE