Scaffold Ga0114364_1020628

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1020628
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4941
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10206285	F011218	N/A	MTSARLSLTYNLNLNAKMSSKPLAQQAKEAKQQQADMQYYTNPAKRRKIDFILEECATLMANCEDSYNARQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN*
Ga0114364_10206286	F009600	N/A	LTYKIVVGKVPSLNAFYASKHWTARVKAKELVSREVMSQLEKYDLQEIKDVHIYCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLVVTE*
Ga0114364_10206287	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTIKIQRANAFGGGGYTQSAPSAPSFAPKGNDDRSASIIRQVALKSAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHVEHFANRNDPF*