Scaffold Ga0114364_1020142

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1020142
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2789
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F078713	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_102014210	F031377	AGGAGG	MITNADNYVPVNRVDQRLTPFNTGKVQIGLLYQPKPPELTSSEELIQAALLGGPSMHKSAPVWPVVLGSALVSCLLMFCVG*
Ga0114364_102014211	F039000	AGGA	MAKSPYTSDKQIEEIMENAQILLNVCETTFEKPSQAWYACLVAAAILTAELGVPLEVFLEGFEHAYSDALKAKKEEGPSYDH*
Ga0114364_10201425	F078713	AGGAG	MSAQPIPAKDVAASIMKIMDEVAADYPEEERAELKAVMLGQLGMALFNGPVTKEEES*
Ga0114364_10201429	F028744	N/A	MYEFLFDCDELGLQLRCFFEYEPAEVGSVEAGTGLKLEPDYPEVWTLMSVFLPNSTVDLSGVLHPDVISQVERGAAEYFEEMRGGDSYD*