Scaffold Ga0114364_1014151

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1014151
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3519
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014976	Metagenome / Metatranscriptome	258	Y
F033041	Metagenome / Metatranscriptome	178	Y
F071251	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10141512	F071251	AGTAG	LVLKIKVMTKAFSTHVNKAIDHDGFHMTFANGCTVSVMFGKHSYGDAGETTAEVAIWDNDDNWYIMNEEDNHMSLIKVPEDSDVIGHCTSDMVAFIMNLAKEL*
Ga0114364_10141513	F014976	N/A	MKNFNKISRAKWNQLKSIADMYEVVGYQWGKNVNYDEVIVWCRDKWDNIRYSHVVVNQNWY*
Ga0114364_10141514	F033041	N/A	MEKIKINTNFKFTFDTDVELRRAQSSGYIKSYDMVRICIKRLDNGNQVDFPIKTREDYFEQVASLNERSNEYDMVEIYQDTHMFDMYDYI*