Scaffold Ga0114364_1011930

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1011930
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3923
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013886	Metagenome / Metatranscriptome	267	N
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10119305	F024308	N/A	VKKVILTNIEYEFLIECLEKLEKHTDDSPADSKWFEKMDTTHRLYELEMEHFNIKKYGDPSTKYQMVTWILTKVKTKSLDF*
Ga0114364_10119306	F013886	N/A	MNELTKPNAFAFKARVGESKEIQLCVCIRENDTWMENDIFSIPEGHPELDPYIDEQLFNNVFIGYERDENKEGFWISHQNSFYMKSDTILTEDLLNNGEFFKLVEKGYQSFYEQSITPEREGEQTPSSEQENL*
Ga0114364_10119309	F024548	N/A	MVDIEEKDLKKYTKLKEGTKFEVGDLVNVYDNTYAKISKGSKLCKENVNKYNTVLRAK*