Scaffold Ga0114364_1011507

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1011507
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8300
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F026860	Metagenome	196	Y
F053888	Metagenome	140	Y
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10115071	F053888	N/A	MNQEPTDIVTIGDRPLRLSRPVLPHAARRLASVFPQLNALNIAGKSQADAAFALGVSVGAIRMWVDLTDMTWTNLKRRGPYKSKK*
Ga0114364_101150711	F002038	AGGAGG	MADVPKGIATIAKTVPRQFALLLLLDGYPYVEMTARKSADFMTDLNAWKRKTYPSLARSNVRFFTLAPTGEVKELTFTK*
Ga0114364_101150714	F001338	N/A	MEPNNDRKPLKSIETAGTYKLKLIKPAFDKVKVWEDGTVSCRLFFLDDQGNCLSKSYSSKWAKPLAMLVGKFSSKYTEELRLDATPAEFMTYCEPAFGKTCLVGVEATPSGEYNGRPQFKYKLTFPKGGQKPVVSEPLPENPPF*
Ga0114364_101150716	F058813	N/A	MTSMAAPTLVLIAGFARAGKDTLASGILEWSTRPSRKQNFADYLKDASNDFLMSLNLPGDFHSEPFKVQHRDFLVAAGRLARSIDVDIFAKNLANFCPINMDPAGVAPETVICSDLRYANEVEVCQDVLIDLGWKVRTIYVSTAGIGPANPEELDSIAEIRERHSFDLELTFAPNSRNTIMQEGRYIAKTWRL*
Ga0114364_101150717	F065732	N/A	MATLDPETIAWGKRIGISRERLEFLAACPKYTRTGRNDKPAYIKTENPNHHLQKLGSCWWLRIRRRKTDIIHNLGKDLDTARKHRDEMLAAYDAGQPIPHLNQ*
Ga0114364_101150719	F026860	GAG	MRRFDPARLIEALRKENQIPPPKGWSTVEQIRQELQLRHARNASSRAYDMTRRGLLERQPHQFRADTGQCHKAYVYRPLPPYRSFKQASEQLSHHNQDKVPKGWVRXXXXXXXXXXRYFKTSRGIIGLHRNAYYLKSAVMALYR*
Ga0114364_10115073	F105031	N/A	MTIIRPHDKPALWWLFPWSYAQTLHTAANALRALCDRQERALEMQSHVISDQSEEISFLRQRVDDLNDSIIRGTAITPDAQPHRDETIHE*
Ga0114364_10115074	F000957	GAG	MSSFKHLDGMVALLSEIYEINERVMCGDICSAKAAIASTRMNKLLHHYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV*