Scaffold Ga0114364_1011148

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1011148
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4103
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F020664	Metagenome	222	Y
F078405	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10111481	F020664	N/A	GHLFKLTESERHIIKTIGGGNYHEGVRICIMWGAHFYNLGLNTEMDLKHIGLVTVSSTDNYPHE*
Ga0114364_10111486	F011580	GGCGG	MTSEGLTMTQTQALTKALILALIAPSDEKANQASDLAESIAKGLDFAQVEQCKADALAMTEGA*
Ga0114364_10111488	F078405	AGGAG	MKQFEYEMRNKRTGRIEHARATAKTKEIARAQIVLMYGTQFDVMGLFSDINPPHYILGEIDCSEFPETDTAWLFNQANEIEAVTA*