NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1010088

Scaffold Ga0114364_1010088


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1010088 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4381
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003714Metagenome / Metatranscriptome472Y
F010765Metagenome / Metatranscriptome299Y
F024551Metagenome205Y
F042864Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_101008810F003714N/AMPNANHPYTETLTFAGRVLPLKRPMAQYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITGTTWVNLNRRGPYRRQK*
Ga0114364_101008811F042864N/AMTTKTTKAELVSDRAMTELLKRKAINFRETAKLKDRDGSVKGLGSYALYGVDHVRGQLVVLASEPTSADFNKYVTAKAKADVVARYDHVVEYRDAGSHSNPKVTILCWTKAE*
Ga0114364_101008813F010765N/AVSAALPPPSPEDITVSLRDLGFGVLIGSAAWLVRYLCSTEKHSLGYIFRRTATAGLTSLLVGLATKGYFSSEGMAFAAAGCAGYASPELVDLLMAKIKAMEGKAPSKG*
Ga0114364_10100886F000957N/AMSSFRHLDGMTALLSELYFINERIMTGDICSAKTAIQSERMKKLLNHYHEALSEDGATKISLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV*
Ga0114364_10100888F024551N/AMHIIKPDSLPRLWWLFPWSIARQLHRNCTALRALADKTDDENRLLRQEVTRLSHSREHWIAKHDRAYAVAMHNEKVIRDMEERSR*
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