Scaffold Ga0114364_1009727

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1009727
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9640
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025727	Metagenome / Metatranscriptome	200	N
F045703	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100972714	F045703	AGGAGG	VKTLPDSFCVAFVYRHKMTSEVLVVDIDRARELDAARPYWQHVSTVDPIIILQLIVRAKGRARTKIIKD*
Ga0114364_100972717	F025727	N/A	MSRHSFPLVESIKVVRLSEGRTIRVLRDRTKDNLKVIHGDGDIHLTCVAQAHDPIEMVKTLARLEDVRSVELIDAKGNGIIIHKQK*