Basic Information | |
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Taxon OID | 3300008267 Open in IMG/M |
Scaffold ID | Ga0114364_1008134 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5026 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F040536 | Metagenome | 161 | N |
F041090 | Metagenome | 160 | Y |
F055552 | Metagenome | 138 | Y |
F090097 | Metagenome | 108 | Y |
F100350 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114364_100813411 | F090097 | GAGG | MTIRSKRVSGKQAIHYRNYRRVRDRALTRLSQAYPETYKELLELEKVNDGTNGAKWIDIDGSNSLVVVTGTGSRQEGTIIESAGYFAEGEGDYE* |
Ga0114364_100813412 | F041090 | GAGG | VRRQTTSVSQENIVQLSDIRRERQRALSPYGPVRAGLTTSQRTDRDRQLTELLSSLENVVADLNSKSYTALDTLIIAIQGARVALSATTIADPGTDLL* |
Ga0114364_100813413 | F100350 | GAGG | MIYSFKCECGSTRDIEQSIHAEIVEPMCTDCHQMMSRSWSSPAITFKGPGFYTNGG* |
Ga0114364_10081345 | F055552 | GGAG | MNKEYWQRKAELCQKIGIEQLMEGDIKNGTRNLKRMVRAMEEINLIKANEGEDKSAADMWASLIASGAMLAGEGESNEGR* |
Ga0114364_10081349 | F040536 | AGGAG | MDELGKVIPFHPVRSPLSLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGNS* |
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