Scaffold Ga0114364_1008134

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1008134
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5026
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100813411	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRVRDRALTRLSQAYPETYKELLELEKVNDGTNGAKWIDIDGSNSLVVVTGTGSRQEGTIIESAGYFAEGEGDYE*
Ga0114364_100813412	F041090	GAGG	VRRQTTSVSQENIVQLSDIRRERQRALSPYGPVRAGLTTSQRTDRDRQLTELLSSLENVVADLNSKSYTALDTLIIAIQGARVALSATTIADPGTDLL*
Ga0114364_100813413	F100350	GAGG	MIYSFKCECGSTRDIEQSIHAEIVEPMCTDCHQMMSRSWSSPAITFKGPGFYTNGG*
Ga0114364_10081345	F055552	GGAG	MNKEYWQRKAELCQKIGIEQLMEGDIKNGTRNLKRMVRAMEEINLIKANEGEDKSAADMWASLIASGAMLAGEGESNEGR*
Ga0114364_10081349	F040536	AGGAG	MDELGKVIPFHPVRSPLSLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGNS*