Scaffold Ga0114364_1007569

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1007569
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13743
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001092	Metagenome / Metatranscriptome	780	Y
F004759	Metagenome / Metatranscriptome	424	Y
F012327	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100756913	F001092	AGGCGG	MATAKPNSTVAKSLKKAGFYEASKPKRLGIINKVTTKPQRIEMVDKLFLSKKVKGGKK*
Ga0114364_100756926	F012327	AGG	VIDKYLQLLSSKIDDRVLQLQEAIADGNAQDFAGYKHMCGEVKGLLTARAHIKDLQERLTNNDDDE*
Ga0114364_10075699	F004759	AGGAG	MDKKDLAQDKKMIKTAIGKHEKNMHQGMKPTKLKKGGPTSLDRKMYGKNXXXXRAMNQKSGSK*