Scaffold Ga0114364

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1006083 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8783
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8783

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (76.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y
F046910	Metagenome / Metatranscriptome	150	Y
F065707	Metagenome / Metatranscriptome	127	Y
F077027	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100608311	F077027	GAG	MNFNLNVHRVKSIRLSAIRSSQTNDMLSASRDIIIETNEGNFELTLFSEYASEDDEQELLEVKV*
Ga0114364_100608314	F017819	N/A	MKKRSKYRPKTVLQSPLDFVLSGFRPLRDMPGVYINMQIKNRAALEQVRKGEAIKEDIEMLIGAFNITEALAIMGKGSDWLDEIRQGQDALLQLSRRGVANGMRFIMTAKQWEALKLVMDLHEEQLAHATVHDIEKAHDFVQKAVAQGKARAIVQTQKETT*
Ga0114364_10060833	F046910	GAGG	VTTPSLAEIVQALDPRPMVQVVIITAGGTKYALIGPVIDCGEVTGIEFGELMPMDVAAKMLSGEHRQWLMGQLQ*
Ga0114364_10060834	F065707	AGGAG	MRPAIFSTENPPVPVTCVETFEYIASLRRRIEVQNDQMEFLVAQAQEFLRKAEHLEREVEKLSFDLGVRQGNVPPGTWVEVRK*
Ga0114364_10060836	F008303	N/A	MIDKIILSAVLGTVGFNGLLPDPPQPLTPWQLQLKAKAASKSAVCNKKKQSKTVKQLCRRWGKEPST*
Ga0114364_10060839	F015204	N/A	MTFTEWWSELTKAEQKHLGLESSRFVWEECQKYTLMTIEDACKAQVAYDQGFKDGRARYEVHVAGWRLTPGVQPGMIWISDAGGEGGDFHIHELAEVIGKFYGEKF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114364_1006083

Overview

Ecosystem & Geography

Associated Families

Sequences