NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1005125

Scaffold Ga0114364_1005125


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1005125 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12156
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F004206Metagenome / Metatranscriptome448Y
F010533Metagenome / Metatranscriptome302Y
F018915Metagenome / Metatranscriptome232Y
F022396Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_100512510F018915AGAAGVNWIYQILKALLDWIRETPPPDVDHGKAPKKLKADLDARIADLPGLPDNGGDGPKR*
Ga0114364_100512512F010533N/AVYQQEFFAPNYSDTQVYSGGMVVYFKTEQKYYQYVGAINSGNPPTLNGPNGTLNSQFWGEAQPTYGNSTGNWSATETYNIGDIVLYPVDQEFYQLFGSAPAGTTPLDGGAYWGRLNKFLRFVNQQTNPDGSARAVQIGETFSVWPGDPRVTWRQQEPTYTLTDAGILVEEELPFVWLEFRKSPPLLSTAGEATAYAFPYRFVEVCSLKSAGQMLRVDGKVDLGTTFLELGEIELTKEIDKVATQEKYVRQIIVPNR*
Ga0114364_100512515F004206GAGLIPQITDYLLRKLPDSFQGWTREALEDYVLFHAQQGTLKIATQDDQVVAVLVGWRQMGPEPKPWTWQASDPNGDHWYWHQFAADSAVFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYPKGSMPIYRVASKHL*
Ga0114364_10051254F022396AGAAGMNVGSNRQLAGEYGGNYISSASGTVTGNWQALHALEITILGATTSNITNFPAGVTLQAGDEIAGVWTSVTVSSGSLIAYNRKYA*
Ga0114364_10051258F001272N/AMEITITLTQEQTNSLLQLIDIAIKAGGYQNAKVGVPLADIIIAAAQHKPE*
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