Scaffold Ga0114364_1004288

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1004288
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7515
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023360	Metagenome / Metatranscriptome	210	Y
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100428810	F028717	AGGA	MDQSFVGNDSQTMNQSAEMQEGQEQQVNAGAIRKSTTNSILNALSNASGQNFESVESALSFIARTTAQQGMTNTQPNTQNVEETQRSNRVTTNDLHEKFNELQQNLAVKEQRLREKELDSDIFKAMGDRFDSDLTDYALSKVKSNIQWNNDGTYSIINNKGQERYGMDGSPLTVQGLVQEIAQGNPKLLKQSNSNSGSGLRPGQGNFAGAPEEGIPDYSKDPAAFNQWAQRNGLGKNVGLKGLNVSATSNFNGQKIL*
Ga0114364_100428811	F023360	AGGA	MAYVLGGASGESNGFTFAIANFALRAMHESQGLVNMTNVVAPTQGNQFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALTQTNVTATPAVAQTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTAGFIGNGISQGSVGSTTGFKATVGNTYYATSADGFDRILQLGALELLPTGATTGYTYTTGFTSNNVLEMIRNAKQQFKAARMPGAPVNVLDSNGYVTESVAGAVGGSGSSLSRLLAELTGGAVSGPSSGGSNLSALGNELLATGKI
Ga0114364_10042886	F023848	GGA	MRQIEVPLYGEQNTILADWLTTDKHSIDIVPVGSGKTFLAAIALPIFASNSRYHKGKDIIYSAPTGAMIKSLIWEPLKQSCINHFGLVDGKDINNSELTIKFPNGCFIRCKSAEQRENLRGLNVGVWIADEAALYTQDTLQEITNRLRPKVGQPDTFGKLIVISTPNGAGPLYDLFQLAKDMPDKYIVRHFNYIQMRSGNREFIEEQKRIISPLKFQQDYMCSFENVADQFYYAWDKNKYCKIINDEGYDLFSFHDFNKRVMCATVAQVKRAGELNGTIEILKSYAINDCSTEGIAQAIRIDFPKRRINSVIDMSGTQVNRDTTSAFGVTDRTIMEKYGFTIVNTRKSNPLITDTDNTSNAFIARGGLIVNPDDKFLLDALQTYHYEDASRKRLVKYTEQRYAHIDGLGDCIRYGIHHLFPITHETLGLSEYIGMDPKYQAMTQPGRQYMPESPLYPGGPTMEEILGLNDTTPDHQVWN*
Ga0114364_10042889	F026558	AGGA	MKNSELLKRSSVYSAIYMQMLGYQNAYLGGYVFKQDVRKKRPSEDSVLWNDLIKNTVAQPVCRYIVDTINDVLFEPGVKRNLKFATPQGQYIDPNNCDWVDLFVNDCDLQTRDITSFMEQVGDLTSIFGHCWVAVDMPQQSEGNLGRPYVCAINPLDVWDWCYDWYGGKPMLKYVKIKEMEDEHCYYLKCYYLGDSNNPSRWCSYEVPKTIKESSLVDNEALMTGEGVFPAGMSIPVFVAFGRKDPRTFDLGVSDIDSACDAQREHYKLECEKYTALQFAHTIIRADKGISIPVHAGAIVRALQGQVEAISVDTGDVDKIIKTQQDILEQIEALTGLGGLRTSKNQIASGVSIIEERKQLHRTAKSKARLMEVTEGLIFTFAARFMDMRWGGQINYNTDYEAHDTNYRMALIQQANILVGENDIIKSLITREIIGMLAPAEDIPEYQQAYVNGLENSEIKDLMTEQDSEVNITDTGSIPLGIEYDEDDDETSGGASNPQGQAKANFNKPGNQSLLGGVGTPVVPMAQSYYTQQAVAVQLAGLNTGR*