Scaffold Ga0114364_1003930

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1003930
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10998
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F027487	Metagenome / Metatranscriptome	194	N
F094055	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100393010	F094055	GGA	MTELIAASLTMAHGSFLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWAKLVRVPRYVKVVLEQGCAYVPNRAYRTADFGISVAMVNKAMCKWTMPSSSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRLPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS*
Ga0114364_100393012	F027487	N/A	MACFTSLPYHNKFYPLLITVSAAAGITPISFGCFDAASDASRLYQFYLAFATIGSLTPVSENCFVQTTEDQQLFVLNEAVAAALIVT*
Ga0114364_100393013	F017989	N/A	MAISQPCFTDLAPDQQNFNIYESLKQIAGFDIPVYDQIDIAYYGITNNIATVQYLNAGVPVATLNLFYSVQPPTTNDANLTTITVTYP*
Ga0114364_10039304	F023326	N/A	MSRIFSGNKGIQKYGIKFPENMDELGIELYCYAISKGEYGRDYCNKHNINLSDFKLLTPYEHFLNAVKLQWPTEVSITNRGYTNTQLLRTLEELCNNNDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGQSNFDTVSPEMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLESQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLKYDSSGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYTIKSKKISVETKDDFKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWARDEKPTDSFLEDDSYSSDENGDW*
Ga0114364_10039305	F021128	AGG	MKLKNRNLAPVGGWYYKYEIKRDKLTFPAVVYGSTWSSLISNIQKDCRSNGIEIPENLEQLVEDQICQRQPSDRCWYADGIGDRIAQAIHTVAAVTDRVLGTKLEHKARGCSSCNRRRNALNSLS*