Scaffold Ga0114364_1003640

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1003640
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8339
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10036403	F092032	AGGAG	MSEVNEGVVCLYGIGLGQVASLYVQGYSVSSGFNNTGMVVDEQGVTRTARYDDRRSEITVDGVAKATSVPQLGASFSFTAKTASAYPGGSASVSFTGVVTKVDDRGSSKGFVTVSVTAESFEGISTY*
Ga0114364_10036404	F001055	N/A	MPFTKSIRHIVEGTLATYLTSQAGLAGVVILTGDSAATQTLPKAVVLCDSARAPGDLQEGLGNYDCSVRVTLFSNADDTTLAVHRERCAALSDCMKSVGLIQAAFATGGDALCYDVTYRSEDEGIDERSWATSFAFDILTCLNPE*
Ga0114364_10036406	F001298	AGG	MSLYAEFLPDAKEMIADFGVAGSANSGAITFKCLISDPAVQTVLEPGGYMERTQYSVRLPAATASWSLPDGSIGASSAIIVSGSPIPSLAQGKKIVAGGKNVRVTTQTYKPGSAWVTLVVIDDNQ*