Scaffold Ga0114364_1003596

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1003596
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8399
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100359610	F012670	AGG	MKTPHDADVLFGEIRPEGSILTDAEKLEYKKQYQKMKRAEKKAMALSTGEKLPKEPKIPLPTGRPKSIVNRVTEYGALFNKLNEERITKGLAPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0114364_100359611	F001915	AGG	MEWTLAHPLHDVDDIVELADSVFGAETDGILTRDRGIFRKNVTVTATVQLFDKGKEFLAVCRHQDILLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVRLINEMIDQHILWAHSWGIPVICSTSIRDEHDGFMRIHKKRGFRVNGSYAYIRTEDGMKGLV*
Ga0114364_10035963	F003521	AGGA	MKSLVYRIREYFNRRTKSVDSSKGADVHRKTLAIENGECASRLIKNEDFALLFNLYRFNLLERLEDCRTDPERIENAFNVAGVRDFIGFIEKTEYLGKVAQKSNT*
Ga0114364_10035964	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSAQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMATEKGLTVKRQNMRKIDVDLEGVMQEMMNPDDDQGTVQEEVNEAIAANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPAKHIYEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPTDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGAPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFSQAMMGLDPSVPELFAKLRRPFEDTLRVLGVKDVDAYLPTLEEAAKIMKAQSEKGPSAEQQKLQSETDLNKAKIEDTMANTAFTQKKAEDIDTDNMFEALAAKRGKLHSVQVD
Ga0114364_10035966	F006264	N/A	MEDHSIIFRQKLSAQAEACARKTLEWLQKDLQGDRTLHPEDVYYLASAAELLLNMRDAYGKK*
Ga0114364_10035967	F001059	AGG	MASYDIEALKADLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKIPADFQTDLNPYIDRKELIPVDEMRKVPPRPADLPDPSSAVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERINKFGQKQPEKYSWLDPRTEEIMLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNLMNIAEKNVTNPWA*
Ga0114364_10035968	F040590	N/A	MSYGKVISGGKQMTNGLTKGINNKLKSFDEGHKRSQTLATAVGKAFNQNPLSDQHLNNINVAAAKKFTTPKLPTNV*
Ga0114364_10035969	F099270	AGG	MSTNFLYAQAPNRTGNVSKHTVSKSGGATNVCGPKHGVSGPTGQQGAPKASGDITGRHQKVQVSTHADYCGSCKNDGYMNKSVKNYLG*