Scaffold Ga0114364_1002953

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1002953
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9452
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014976	Metagenome / Metatranscriptome	258	Y
F018176	Metagenome / Metatranscriptome	236	Y
F018715	Metagenome / Metatranscriptome	233	Y
F033039	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100295311	F014976	N/A	MVKFNKVSKTKWNQLKGIADQYEVVGYQYGKNVTYNEVKVWCRDKWDNIRYSHVVINENWY*
Ga0114364_10029532	F018176	N/A	MLSVLAPILLFLSADTNQVNVQVHNAQHIQTVGGRDITFGVKETVEELLIDKGYTPSDSLGLPVHVSIDSIYSPQQMLNIMGLQWLRKDYIVETSVCIGSSCFKAMGERRTFIFAMFLNVENGEVPLNKKAFSKSLQEALTKTTKQF*
Ga0114364_100295320	F033039	N/A	MTPHQKAAHEILHEYYFMLPNNGYMYGGCNSCDSRYKEAIECALLSVKRIILTLEFMSVESDAAFIMDRINFYDEVQAELYKIKDGDSKLSWDNLMEVFKK*
Ga0114364_10029537	F018715	N/A	MNELNEQANQEAIFNAKCDDILFYSDKLGVQLEVVWSAFKHKEQFPNASLLECLQVGADEWDV*