Scaffold Ga0114364

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1002633 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21035
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (23.40%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21035

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (23.40%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F023325	Metagenome / Metatranscriptome	210	N
F049572	Metagenome / Metatranscriptome	146	N
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100263315	F049572	N/A	MENQQQLARVNDVNAAITPEMLEASANLSSLKTAINLSPEYIELSKPGENFRGIFWGFTEITVNDQVTGEQRQIPAAAFLVDKCIRINGGVALVSECKKAGIDKGTPLEVTFKEKKGNLKIYSLTLLA*
Ga0114364_100263316	F088542	N/A	VVIFVATLFLTPRIMAKKKSTPKYIDRKYNYPKGYTQRGKKKTGFAPSKLGAKLFVEANLDKIKKGTLPFDSLTTREKRIYRGKQSNTFANTFRFKDKNFYDPTGVLRKALDNIPNLKGKRNLTNLLPEKDFKEFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKKQFYRDESGSLMDIVTKLQKSRKQGREVRVIDTDGSIKTGVDAIERMRSFEAEKVKQFTDAANEGDNIQLQIIYISTDWNPYTNTVTYNLNNVQVNDLNQTP*
Ga0114364_100263333	F023325	AGTAG	MRILSPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTASALVGTQYYLQPDEVLDSKNNFLTTIEMVDSGTNATAPTTPTTDPLTPGQAAQGYLYICNTKREILASLPLYTLIRRLNAGKPQYLYFDEPVVWQNCFIQFESLGTAINAAHSVWLKVTYSPVEK*
Ga0114364_100263345	F006345	N/A	MDNKTAKQIISEAMNIAIAKGCFGLVEVTNIVKAVEFLSNQPDVEFGSVDQE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114364_1002633

Overview

Ecosystem & Geography

Associated Families

Sequences