NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114364_1001352

Scaffold Ga0114364_1001352


Overview

Basic Information
Taxon OID3300008267 Open in IMG/M
Scaffold IDGa0114364_1001352 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29925
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (70.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015965Metagenome250Y
F024254Metagenome206Y
F039599Metagenome / Metatranscriptome163Y
F077007Metagenome / Metatranscriptome117N
F089863Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0114364_100135221F089863GAGMCEAYAAQQLSINIPEEEWKQWAAGLKAIDIFANEGIPSPEIYENWQDWATALVGAVNQSTEETAT*
Ga0114364_100135222F024254GAGGMTFIEIFNYVAKVARPAHAKATIAESMDDVFVDIGLDSLDGLVMLMYFDELYGIADEVSKEWTPKSVQELHDLVMGSKTKEPASMEEVAEVCK*
Ga0114364_100135224F015965AGGMLVDSKKKQLSQEAILMIAAQETKSPHPASAIYAAMVKEMNMPGTSLVRDGNTLFVIHVGDGRTGVFRALNADTARNYLENSYAFIQGAYKMGFDVLVSEFEDPTIFNIFKAISRNPPQEGMGYRAERTDKGFRVTVKLGPKRAERD*
Ga0114364_100135230F039599AGGAMLSEETIKQIFFQSDRPRKDPLIADEVDIMQFAHNIELYVAVEYARKEHARCVEIVKDMNAAVGNALENQRPA*
Ga0114364_100135232F077007GAGGMRNQNAAHIDFFQFKGLIETNPKATPCDIDMVFERKCKFFVGEWKRDGESISQGQGLLLRNLARQPQFTVVIIQGNTDGETVVERFEQLCSDGRFRVRGKSFDDLKKFVTRWYNWADAQEFQ*
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